Saya mencoba menerapkan makalah ini pada serangkaian gambar medis. Saya melakukannya di Keras. Jaringan pada dasarnya terdiri dari 4 lapisan conv dan max-pool diikuti oleh lapisan yang sepenuhnya terhubung dan classifier soft max.
Sejauh yang saya tahu, saya telah mengikuti arsitektur yang disebutkan di koran. Namun, validasi kehilangan dan akurasi tetap rata. Akurasi tampaknya diperbaiki pada ~ 57,5%.
Setiap bantuan di mana saya mungkin salah akan sangat dihargai.
Kode saya:
from keras.models import Sequential
from keras.layers import Activation, Dropout, Dense, Flatten
from keras.layers import Convolution2D, MaxPooling2D
from keras.optimizers import SGD
from keras.utils import np_utils
from PIL import Image
import numpy as np
from sklearn.utils import shuffle
from sklearn.cross_validation import train_test_split
import theano
import os
import glob as glob
import cv2
from matplotlib import pyplot as plt
nb_classes = 2
img_rows, img_cols = 100,100
img_channels = 3
#################### DATA DIRECTORY SETTING######################
data = '/home/raghuram/Desktop/data'
os.chdir(data)
file_list = os.listdir(data)
##################################################################
## Test lines
#I = cv2.imread(file_list[1000])
#print np.shape(I)
####
non_responder_file_list = glob.glob('0_*FLAIR_*.png')
responder_file_list = glob.glob('1_*FLAIR_*.png')
print len(non_responder_file_list),len(responder_file_list)
labels = np.ones((len(file_list)),dtype = int)
labels[0:len(non_responder_file_list)] = 0
immatrix = np.array([np.array(cv2.imread(data+'/'+image)).flatten() for image in file_list])
#img = immatrix[1000].reshape(100,100,3)
#plt.imshow(img,cmap = 'gray')
data,Label = shuffle(immatrix,labels, random_state=2)
train_data = [data,Label]
X,y = (train_data[0],train_data[1])
# Also need to look at how to preserve spatial extent in the conv network
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.3, random_state=4)
X_train = X_train.reshape(X_train.shape[0], 3, img_rows, img_cols)
X_test = X_test.reshape(X_test.shape[0], 3, img_rows, img_cols)
X_train = X_train.astype('float32')
X_test = X_test.astype('float32')
X_train /= 255
X_test /= 255
Y_train = np_utils.to_categorical(y_train, nb_classes)
Y_test = np_utils.to_categorical(y_test, nb_classes)
model = Sequential()
## First conv layer and its activation followed by the max-pool layer#
model.add(Convolution2D(16,5,5, border_mode = 'valid', subsample = (1,1), init = 'glorot_normal',input_shape = (3,100,100))) # Glorot normal is similar to Xavier initialization
model.add(Activation('relu'))
model.add(MaxPooling2D(pool_size = (2,2),strides = None))
# Output is 48x48
print 'First layer setup'
###########################Second conv layer#################################
model.add(Convolution2D(32,3,3,border_mode = 'same', subsample = (1,1),init = 'glorot_normal'))
model.add(Activation('relu'))
model.add(Dropout(0.6))
model.add(MaxPooling2D(pool_size = (2,2),strides = None))
#############################################################################
print ' Second layer setup'
# Output is 2x24
##########################Third conv layer###################################
model.add(Convolution2D(64,3,3, border_mode = 'same', subsample = (1,1), init = 'glorot_normal'))
model.add(Activation('relu'))
model.add(Dropout(0.6))
model.add(MaxPooling2D(pool_size = (2,2),strides = None))
#############################################################################
# Output is 12x12
print ' Third layer setup'
###############################Fourth conv layer#############################
model.add(Convolution2D(128,3,3, border_mode = 'same', subsample = (1,1), init = 'glorot_normal'))
model.add(Activation('relu'))
model.add(Dropout(0.6))
model.add(MaxPooling2D(pool_size = (2,2),strides = None))
#############################################################################
print 'Fourth layer setup'
# Output is 6x6x128
# Create the FC layer of size 128x6x6#
model.add(Flatten())
model.add(Dense(2,init = 'glorot_normal',input_dim = 128*6*6))
model.add(Dropout(0.6))
model.add(Activation('softmax'))
print 'Setting up fully connected layer'
print 'Now compiling the network'
sgd = SGD(lr=0.01, decay=1e-4, momentum=0.6, nesterov=True)
model.compile(loss = 'mse',optimizer = 'sgd', metrics=['accuracy'])
# Fit the network to the data#
print 'Network setup successfully. Now fitting the network to the data'
model. fit(X_train,Y_train,batch_size = 100, nb_epoch = 20, validation_split = None,verbose = 1)
print 'Testing'
loss,accuracy = model.evaluate(X_test,Y_test,batch_size = 32,verbose = 1)
print "Test fraction correct (Accuracy) = {:.2f}".format(accuracy)